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Ecology

Recent Publications

372 publications found:

2013

  • Duncan JP. 2013. Characterization of Fish Passage Conditions through the Fish Weir and Turbine Unit 1 at Foster Dam, Oregon, Using Sensor Fish, 2012. PNNL-22236, Pacific Northwest National Laboratory, Richland, WA. 
  • Klett KJ, C Torgersen, J Henning, and CJ Murray. 2013. "Spatial consistency of Chinook salmon redd distribution within and among years in the Cowlitz River, Washington." North American Journal of Fisheries Management 33(3):508-518.  doi:10.1080/02755947.2013.778924
  • Bryson AJ, CM Woodley, RK Karls, KD Hall, MA Weiland, Z Deng, TJ Carlson, and MB Eppard. 2013. "Comparison of 180-degree and 90-degree needle rotation to reduce wound size in PIT-injected juvenile Chinook salmon." Fisheries Research 143:201– 204.  doi:10.1016/j.fishres.2013.02.011
  • Geist DR, TJ Linley, VI Cullinan, and Z Deng. 2013. "The effects of total dissolved gas on chum salmon fry survival, growth, gas bubble disease, and seawater tolerance ." North American Journal of Fisheries Management 33(1):200-215.  doi:10.1080/02755947.2012.750634
  • Hughes JS, GE Johnson, GR Ploskey, MJ Hennen, ES Fischer, and SA Zimmerman. 2013. Optimization of Hydroacoustic Equipment Deployment at Foster Dam, 2013. PNNL-22359, Pacific Northwest National Laboratory, Richland, WA. 
  • Thorncraft G, LJ Baumgartner, CA Boys, and RS Brown. 2013. "Merging hydraulics with biology." International Water Power & Dam Construction 65(1):42-43. 
  • Vernon CR, EV Arntzen, MC Richmond, RA McManamay, TP Hanrahan, and CL Rakowski. 2013. GIS Framework for Large River Geomorphic Classification to Aid in the Evaluation of Flow-Ecology Relationships. PNNL-22296, Pacific Northwest National Laboratory, Richland, WA. 
  • Walker RW, LM Markillie, AHA Colotelo, DR Geist, ME Gay, CM Woodley, MB Eppard, and RS Brown. 2013. "Ultraviolet radiation as disinfection for fish surgical tools." Animal Biotelemetry 1:Article No. 4.  doi:10.1186/2050-3385-1-4
  • Walker RW, LM Markillie, AHA Colotelo, ME Gay, CM Woodley, and RS Brown. 2013. The Efficacy of Ultraviolet Radiation for Sterilizing Tools Used for Surgically Implanting Transmitters into Fish . PNNL-21126, Pacific Northwest National Laboratory, Richland, WA. 

2012

2011

2010

  • Boyd JW, CS Guy, T Horton, and SA Leathe. 2010. "Effects of Catch-and-Release Angling on Salmonids at Elevated Water Temperatures." North American Journal of Fisheries Management 30(4):898-907.  doi:10.1577/M09-107.1
  • Boyd JW, EW Oldenburg, and GA McMichael. 2010. "Color Photographic Index of Fall Chinook Salmon Embryonic Development and Accumulated Thermal Units." PLoS One 5(7):Article No. e11877.  doi:10.1371/journal.pone.0011877
  • Brown RS, CR Duguay, RP Mueller, L Moulton, PJ Doucette, and JD Tagestad. 2010. "Use of Synthetic Aperture Radar (SAR) to Identify and Characterize Overwintering Areas of Fish in Ice-Covered Arctic RIvers: A Demonstration with Broad Whitefish and their Habitats in the Sagavanirktok River, Alaska." Transactions of the American Fisheries Society 139:1711-1722. 
  • Chen Y, Z Huang, PC Wong, PS Mackey, CH Allwardt, J Ma, and FL Greitzer. 2010. "An Advanced Decision Support Tool for Electricity Infrastructure Operations." In Critical Infrastructure Protection IV, IFIP Advances in Information and Communication Technology, vol. 342, no. 2010, ed. T. Moore and S. Shenoi, pp. 245-260.  Springer, New York, NY.  doi:10.1007/978-3-642-16806-2_17
  • Coleman AM, DL Ward, KB Larson, and JW Lettrick. 2010. Development of a high-resolution bathymetry dataset for the Columbia River through the Hanford Reach. PNNL-19878, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, MA Weiland, TJ Carlson, and MB Eppard. 2010. "Design and Instrumentation of a Measurement and Calibration System for an Acoustic Telemetry System." Sensors 10(4):3090-3099.  doi:10.3390/s100403090
  • Deng Z, RP Mueller, MC Richmond, and GE Johnson. 2010. "Injury and mortality of juvenile salmon entrained in a submerged jet entering still water." North American Journal of Fisheries Management 30(3):623-628. 
  • Deng Z, TJ Carlson, JP Duncan, MC Richmond, and DD Dauble. 2010. "Use of an Autonomous Sensor to Evaluate the Biological Performance of the Advanced Turbine at Wanapum Dam." Journal of Renewable and Sustainable Energy 2(5):053104.  doi:10.1063/1.3501336
  • Downs JL, KD Hand, and MA Chamness. 2010. Biological Review of Miscellaneous Debris Items on the North Slope: Hanford Reach National Monument Block 15. PNNL-19777, Pacific Northwest National Laboratory, Richland, WA. 
  • Duncan JP, TM Poston, and RL Dirkes. 2010. Summary of the Hanford Site Environmental Report for Calendar Year 2009. PNNL-19455 -SUM, Pacific Northwest National Laboratory, Richland, WA. 
  • Duncan JP. 2010. Evaluation of Fish Passage Conditions for Juvenile Salmonids Using Sensor Fish at Detroit Dam, Oregon. PNNL-18747, Pacific Northwest National Laboratory, Richland, WA. 
  • Gingerich AJ, DP Philipp, and CD Suski. 2010. "Effects of nutritional status on metabolic rate, exercise and recovery in a freshwater fish." Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology 180(3):371-384.  doi:10.1007/s00360-009-0419-4
  • Ham KD. 2010. "Corps uses simulations to design salmon passage improvements." Hydro Review 29(6):,
  • Mackley RD, FA Spane, TC Pulsipher, and CH Allwardt. 2010. Guide to using Multiple Regression in Excel (MRCX v.1.1) for Removal of River Stage Effects from Well Water Levels. PNNL-19775 Rev. 1., Pacific Northwest National Laboratory, Richland, WA. 
  • McMichael GA, MB Eppard, TJ Carlson, JA Carter, BD Ebberts, RS Brown, MA Weiland, GR Ploskey, RA Harnish, and Z Deng. 2010. "The Juvenile Salmon Acoustic Telemetry System; A New Tool." Fisheries 35(1):9-22. 
  • McMichael GA, RA Harnish, BJ Bellgraph, JA Carter, KD Ham, PS Titzler, and MS Hughes. 2010. Migratory Behavior and Survival of Juvenile Salmonids in the Lower Columbia River and Estuary in 2009 . PNNL-19545, Pacific Northwest National Laboratory, Richland, WA. 
  • Panther JL, RS Brown, GL Gaulke, CM Woodley, and KA Deters. 2010. Influence of Incision Location on Transmitter Loss, Healing, Incision Lengths, Suture Retention, and Growth of Juvenile Chinook Salmon. PNNL-19192, Pacific Northwest National Laboratory, Richland, WA. 
  • Tagestad JD. 2010. Analysis and Mapping of Vegetation and Habitat for the Sheldon National Wildlife Refuge. PNNL-19438, Pacific Northwest National Laboratory, Richland, WA. 
  • Bellgraph BJ, GA McMichael, RP Mueller, and JL Monroe. 2010. "Behavioural response of juvenile Chinook salmon Oncorhynchus tshawytscha during a sudden temperature increase and implications for survival." Journal of Thermal Biology 35(1):6-10. 
  • Brown RS, RA Harnish, KM Carter, JW Boyd, KA Deters, and MB Eppard. 2010. "An evaluation of the maximum tag burden for implantation of acoustic transmitters in juvenile Chinook salmon." North American Journal of Fisheries Management 30:499-505. 
  • Deters KA, RS Brown, KM Carter, JW Boyd, MB Eppard, and A Seaburg. 2010. "Performance Assessment of Suture Type, Water Temperature, and Surgeon Skill in Juvenile Chinook Salmon Surgically Implanted with Acoustic Transmitters." Transactions of the American Fisheries Society 139(3):888-899. 
  • Deters KA, RS Brown, KM Carter, JW Boyd, MB Eppard, and A Seaburg. 2010. "Performance Assessment of Suture Type, Water Temperature, and Surgeon Skill in Juvenile Chinook Salmon Surgically Implanted with Acoustic Transmitters." Transactions of the American Fisheries Society 139(3):888-899. 
  • Faber DM, GR Ploskey, MA Weiland, Z Deng, JS Hughes, RL McComas, J Kim, RL Townsend, T Fu, JR Skalski, and ES Fischer. 2010. Evaluation of a Behavioral Guidance Structure at Bonneville Dam Second Powerhouse including Passage Survival of Juvenile Salmon and Steelhead using Acoustic Telemetry, 2008. PNNL-18753, Pacific Northwest National Laboratory, Richland, WA. 
  • Geist DR, Z Deng, RP Mueller, SR Brink, and JA Chandler. 2010. "Survival and growth of juvenile Snake River fall Chinook salmon exposed to constant and fluctuating temperatures." Transactions of the American Fisheries Society 139(1):92-107 .  doi:10.1577/T09-003.1
  • Johnson GE, HL Diefenderfer, AB Borde, AJ Bryson, A Cameron, AM Coleman, C Corbett, EM Dawley, BD Ebberts, R Kauffman, GC Roegner, MT Russell, A Silva, JR Skalski, RM Thom, J Vavrinec, III, DL Woodruff, and SA Zimmerman. 2010. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2009. PNNL-19440, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, F Khan, GR Ploskey, JS Hughes, and ES Fischer. 2010. Optimization of Hydroacoustic Equipment Deployments at Lookout Point and Cougar Dams, Willamette Valley Project, 2010. PNNL-19293, Pacific Northwest National Laboratory, Richland, WA. 
  • Khan F, GE Johnson, and MA Weiland. 2010. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam, 2009-2010 . PNNL-19615, Pacific Northwest National Laboratory, Richland, WA. 
  • Matzner S, AR Maxwell, JR Myers, KA Caviggia, JL Elster, MG Foley, ME Jones, GL Ogden, EL Sorensen, LM Zurk, JD Tagestad, AJ Stephan, ME Peterson, and DJ Bradley. 2010. "Small Vessel Contribution to Underwater Noise." In Oceans 2010 MTS/IEEE Seattle.  Institute of Electrical and Electronics Engineers (IEEE), Piscataway, NJ.  doi:10.1109/OCEANS.2010.5663818
  • Perkins WA, PS Titzler, MC Richmond, JA Serkowski, SE Kallio, and BJ Bellgraph. 2010. Acoustic Doppler Current Profiler Surveys of Velocity Downstream of Albeni Falls Dam. PNNL-19816, Pacific Northwest National Laboratory, Richland, WA. 
  • Poston TM, JP Duncan, and RL Dirkes. 2010. Hanford Site Environmental Report for Calendar Year 2009. PNNL-19455 Rev. 0, Pacific Northwest National Laboratory, Richland, WA. 
  • Simmons MA, TM Poston, BL Tiller, A Stegen, KD Hand, and JM Brandenberger. 2010. Canada Geese at the Hanford Site – Trends in Reproductive Success, Migration Patterns, and Contaminant Concentrations . PNNL-19212, Pacific Northwest National Laboratory, Richland, WA. 
  • Stephenson JR, AJ Gingerich, RS Brown, BD Pflugrath, Z Deng, TJ Carlson, M Langeslay, ML Ahmann, RL Johnson, and A Seaburg. 2010. "Assessing barotrauma in neutrally and negatively bouyant juvenile salmonids exposed to simulated hydro-turbine passage using a mobile aquatic barotrauma laboratory." Fisheries Research 106(3):271–278.  doi:10.1016/j.fishres.2010.08.006
  • Titzler PS, GA McMichael, and JA Carter. 2010. "Autonomous Acoustic Receiver Deployment and Mooring Techniques for Use in Large Rivers and Estuaries ." North American Journal of Fisheries Management 30(4):853-859.  doi:10.1577/M09-143.1
  • Yu XY, AJ Petrocchi, DK Craig, CS Glantz, DM Trott, JT Ciolek, PY Lu, JA Bond, TE Tuccinardi, and PR Bouslaugh. 2010. "The development and application of the chemical mixture methodology in analysis of potential health impacts from airborne release in emergencies." Journal of Applied Toxicology 30(6):513-524.  doi:10.1002/jat.1558

2009

2008

2007

2006

  • Bellgraph BJ, BE Thompson, DB Hayes, and TS Riley. 2006. "Growth of age-0 steelhead (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis) in the Pine River watershed, Alcona County, Michigan ." Journal of Freshwater Ecology 21(4):687-692. 
  • Brown RS, DR Geist, and MG Mesa. 2006. "Use of Electromyogram Telemetry to Assess Swimmng Activity of Adult Spring Chinook Salmon Migrating Past a Columbia River Dam." Transactions of the American Fisheries Society 135(2):281-287.  doi:10.1577/T05-223.1
  • Brown RS, DR Geist, KA Deters, and MA Grassel. 2006. "Effects of surgically implanted acoustic transmitters >2% of body mass on the swimming performance, survival, and growth of juvenile sockeye and Chinook salmon." Journal of Fish Biology 69(6):1626-1638.  doi:10.1111/j.1095-8649.2006.01227.x
  • Fritz BG, F Khan, and DP Mendoza. 2006. "Evaluation of airflow patterns following procedures established by NUREG-1400." Health Physics. Operational Radiation Safety 91(8):S18-S23. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of fall Chinook salmon embryos, alevin, and fry exposed to variable thermal and dissolved oxygen regimes." Transactions of the American Fisheries Society 135(6):1462-1477. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of Snake River fall Chinook salmon Embryos, Alevins, and Fry Exposed to Variable Thermal and Dissolved Oxygen Regimes." Transactions of the American Fisheries Society 135(6):1462-1477.  doi:10.1577/T05-294.1
  • McGrath KE, E Dawley, and DR Geist. 2006. Total Dissolved Gas Effects on Fishes of the Lower Columbia River. PNNL-15525, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, SA Zimmerman, JS Hughes, KE Bouchard, ES Fischer, CR Schilt, ME Hanks, J Kim, JR Skalski, J Hedgepeth, and WT Nagy. 2006. Hydroacoustic Evaluation of Fish Passage Through Bonneville Dam in 2005. PNNL-15944, Pacific Northwest National Laboratory, Richland, WA. 
  • Arntzen EV, DR Geist, and PE Dresel. 2006. "Effects of Fluctuating River flow on Groundwater/Surface Water Mixing in the Hyporheic Zone of a Regulated, Large Cobble Bed River ." River Research and Applications 22(8):937-946.  doi:10.1002/rra.947
  • Cook CB, B Dibrani, JA Serkowski, MC Richmond, PS Titzler, and GW Dennis. 2006. Acoustic Doppler Current Profiler Measurements in the Tailrace at John Day Dam. PNNL-15627, Pacific Northwest National Laboratory, Richland, WA. 
  • Cook CB, B Dibrani, MC Richmond, MD Bleich, PS Titzler, and T Fu. 2006. Hydraulic Characteristics of the Lower Snake River During Periods of Juvenile Fall Chinook Migration. PNNL-15532, Pacific Northwest National Laboratory, Richland, WA. 
  • Dauble DD, RA Moursund, and MD Bleich. 2006. "Swimming behaviour of juvenile Pacific lamprey, Lampetra tridentata." Environmental Biology of Fishes 75(2):167-171.  doi:10.1007/s10641-005-4698-7
  • Horton DG, and MA Chamness. 2006. Borehole Data Package for RCRA Well 299-W22-47 at Single-Shell Tank Waste Management Area S-SX, Hanford Site, Washington. PNNL-15775, Pacific Northwest National Laboratory, Richland, WA. 
  • Horton DG, and MA Chamness. 2006. Borehole Data Package for Two RCRA Wells 299-W11-25B and 299-W11-46 at Single-Shell Tank Waste Management Area T, Hanford Site, Washington. PNNL-15776, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, F Khan, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, JA Serkowski, and JR Skalski. 2006. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Sluiceway, 2005. PNNL-15540, Pacific Northwest National Laboratory, Richland, WA. 
  • Mueller RP, RS Brown, HH Hop, and L Moulton. 2006. "Video and acoustic camera techniques for studying fish under ice: a review and comparison." Reviews in Fish Biology and Fisheries 16(2):213-226.  doi:10.1007/s11160-006-9011-0
  • Mueller RP, RS Brown, HH Hop, and L Moulton. 2006. "Video and acoustic camera techniques for studying fish under ice: a review and comparison." Reviews in Fish Biology and Fisheries 16(2):213-226. 
  • Mueller RP, RA Moursund, and MD Bleich. 2006. "Tagging Juvenile Pacific Lamprey with Passive Integrated Transponders: Methodology, Short-Term Mortality, and Influence on Swimming Performance." North American Journal of Fisheries Management 26(2):361-366.  doi:10.1577/M05-017.1
  • Mueller RP, RA Moursund, and MD Bleich. 2006. "Tagging Juvenile Pacific Lamprey with Passive Integrated Transponders: Methodology, Short-Term Mortality, and Influence on Swimming Performance." North American Journal of Fisheries Management 26:361-366.  doi:10.1577/M05-017.1
  • Ploskey GR, GE Johnson, MA Weiland, F Khan, RP Mueller, JA Serkowski, CL Rakowski, J Hedgepeth, JR Skalski, BD Ebberts, and BA Klatte. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams ." In HydroVision 2006, p. 13 pages.  HCI Publications, Kansas City, MO. 

2005

2004

2003

2002

2001

2000

  • Geist DR, CS Abernethy, SL Blanton, and VI Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129(1):126-135. 
  • Johnson GE, NS Adams, RL Johnson, DW Rondorf, DD Dauble, and TY Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129(2):381-397. 
  • Tiller BL, RK Zufelt, SD Turner, LL Cadwell, L Bender, and GK Turner. 2000. Population Characteristics and Seasonal Movement Patterns of the Rattlesnake Hills Elk Herd - Status Report 2000. PNNL-13331, Pacific Northwest National Laboratory, Richland, WA. 
  • Dauble DD, and RP Mueller. 2000. "Difficulties in estimating survival for adult chinook salmon in the Columbia and Snake rivers." Fisheries 25(8):24-34. 
  • Johnson RL, and GE Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, ed. Mufeed Odeh, pp. 57-67.  American Fisheries Society, Bethesda, MD. 
  • Johnson RL, and RA Moursund. 2000. "Evaluation of Juvenile Salmon Behavior at Bonneville Dam, Columbia River, Using a Multibeam Technique ." Aquatic Living Resources 13(5):313-318. 
  • Neitzel DA, EJ Antonio, CJ Fosmire, RA Fowler, CS Glantz, SM Goodwin, DW Harvey, PL Hendrickson, DG Horton, TM Poston, AC Rohay, PD Thorne, and MK Wright. 2000. Hanford Site National Environmental Policy Act (NEPA) Characterization. PNNL-6415 Rev. 12, Pacific Northwest National Laboratory, Richland, WA. 
  • Neitzel DA, MC Richmond, DD Dauble, RP Mueller, RA Moursund, CS Abernethy, and GR Guensch. 2000. Laboratory Studies on the Effects of Shear on Fish. PNNL-13323, Pacific Northwest National Laboratory, Richland, WA. 
  • Petrie GM, VI Cullinan, LL Cadwell, JL Downs, EM Perry, and J Turner. 2000. "Integration of Hyperspectral Data for Rangeland Characterization." In International Archives of Photogrammetry and Remote Sensing (IAPRS), vol. 33, no. B7/3, pp. 1142-1148.  ISPRS, Stuttgardt, Germany. 

1999

1998

  • Downs JL, and RA Black. 1998. "Leaf surface characteristics and gas exchange in Artemisia tridentata subspecies wyomingensis and tridentata ." In Proceedings, Shrubland Ecotones , pp. 108-112.  US Department of Agriculture, Forest Service Rocky Mountain Forest & Range Experimental Station, Fort Collins, CO. 
  • Garrott R, JG Cook, MM Bernoco, JF Kirpatrick, LL Cadwell, S Cherry, and BL Tiller. 1998. "Antibody Response of Elk Immunized with Porcine Zona Pellucida." Journal of Wildlife Diseases 34(3):539-546. 
  • Johnson RL, DS Daly, and GE Johnson. 1998. "Combining Hydroacoustics, Flow Models to Study Fish Behavior." Hydro Review XVII(7):40-56. 

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